Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 7476 |
| PDBID: | 6JHR |
| Chains: | ED_C |
| Organism: | Human hepatitis A virus Hu/Australia/HM175/1976, Mus musculus |
| Method: | EM |
| Resolution (Å): | 3.68 |
| Reference: | 10.1371/journal.pbio.3000229 |
| Antibody | |
| Antibody: | F6 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Hepatitis A virus (HAV) VP3 |
| Antigen mutation: | No |
| Durg Target: | P06441; P13901; P08617; |
Sequence information
Antibody
Heavy Chain: E
Mutation: NULL
| >6JHR_E|Chain E|FAB Heavy Chain|Mus musculus (10090) EVKLVESGGGLVKPGGSLKLSCAASMYNFQHYGMSWVRQTPEKRLEWVATIQTNATYTYYPDSVKGRFTISRDNARNILYLQMSSLRSGDTAMYYCARRDNIECHYYFDYWGQGTTLTVSSPKTTPPSVYPLAPASASTAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR |
Light Chain: D
Mutation: NULL
| >6JHR_D|Chain D|FAB Light Chain|Mus musculus (10090) DIVLTQSPAIMSASPGERVTMTCSAHQYVSYMHWYQQKSGTSPKRWIYDTSRLADAIPQRFSGRGSGTSYSLTISSMEAEDAATYYCQQWQSNPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
Antigen
Chain: C
Mutation: NULL
| >6JHR_C|Chain C|VP3|Human hepatitis A virus Hu/Australia/HM175/1976 (12098) MMRNETRVSTTENVVNLSNYEDARAKMSFALDQEDWKSDPSQGGGIKITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCITALASICQMFCFWRGDLVFDFQVFPTKYHSGRLLFCFVPGNELIDVTGITLKQATTAPCAVMDIAGVQSTLRFRVPWISDTPYRVNRYTKEAHQKGEYTAIGKLIVYCYNRLTSPSNVAHHVRVNVYLSAINLECFAPLYHAMDVTTQ |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| D: TYR31 ARG45 TYR48 ARG52 LEU53 ASP55 E: TYR27 ASN28 PHE29 GLN30 HIS31 TYR32 GLN52 THR53 ASN54 THR56 TYR57 ASN74 ARG98 ASP100 ASN101 ILE102 GLU103 CYS104 TYR106 TYR107 ASP109 C: ASN67 SER69 ASP70 SER71 VAL72 GLY73 GLN74 GLN75 ILE76 LYS77 VAL78 LEU141 ILE142 ASP143 THR145 GLY146 ILE147 THR148 LEU149 LYS150 LYS201 TYR205 ARG209 THR245 GLN246 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
