Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 6264 |
| PDBID: | 8GO8 |
| Chains: | HL_A |
| Organism: | Rattus norvegicus, Homo sapiens, Mus musculus |
| Method: | EM |
| Resolution (Å): | 3.41 |
| Reference: | 10.1016/j.molcel.2023.04.025 |
| Antibody | |
| Antibody: | 30 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Rattus norvegicus beta arrestin 1 |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: H
Mutation: NULL
| >8GO8_H|Chain E[auth H], F[auth I]|Fab30 heavy chain|Mus musculus (10090) EISEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH |
Light Chain: L
Mutation: NULL
| >8GO8_L|Chain G[auth L], H[auth M]|Fab30 light chain|Mus musculus (10090) SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Antigen
Chain: A
Mutation: NULL
| >8GO8_A|Chain A, C[auth B]|Beta-arrestin-1|Rattus norvegicus (10116) MGDKGTRVFKKASPNGKLTVYLGKRDFVDHIDLVDPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKEEPPHREVPESETPVDTNLIELDTNDDDIVFEDFARQRLKGMKDDKDEEDDGTGSPHLNNR |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| Chain residues position delta_SASA
: residuesposition H: ASN31 TYR33 SER34 SER56 TYR57 TYR58 GLY59 TYR60 TYR62 ARG103 PHE105 TRP106 TYR107 SER108 L: SER1 SER31 SER32 ALA33 TYR50 SER51 SER54 ARG67 TYR92 LYS93 TYR94 VAL95 VAL97 A: ARG7 TYR173 HIS210 GLY211 GLU212 PRO213 THR275 PRO276 PHE277 LEU278 ALA279 ARG282 ASP297 THR298 ASN299 LEU300 HIS353 PRO354 PRO356 LYS357 GLU358 GLU359 PRO360 PRO361 HIS362 VAL365 PRO366 GLU367 SER368 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 6 Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 6 Å from any atom.
Interacting residues (Atom distance based)
