Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 573 |
| PDBID: | 3L95 |
| Chains: | BA_X |
| Organism: | Homo sapiens |
| Method: | XRD |
| Resolution (Å): | 2.19 |
| Reference: | 10.1038/nature08878 |
| Antibody | |
| Antibody: | anti-NRR1 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Neurogenic locus notch homolog protein 1 |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: B
Mutation: NULL
| >3L95_B|Chain B, E[auth H]|anti-NRR1 fab fragment heavy chain|Homo sapiens (9606) EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYWIHWVRQAPGKGLEWVARINPPNRSNQYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGFRWVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT |
Light Chain: A
Mutation: NULL
| >3L95_A|Chain A, D[auth L]|anti-NRR1 fab fragment light chain|Homo sapiens (9606) DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFYTTPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Antigen
Chain: X
Mutation: NULL
| >3L95_X|Chain C[auth X], F[auth Y]|Neurogenic locus notch homolog protein 1|Homo sapiens (9606) GSACELPECQEDAGNKVCSLQCNNHACGWDGGDCSLNFNDPWKNCTQSLQCWKYFSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDGLDCAEHVPERLAAGTLVVVVLMPPEQLRNSSFHFLRELSRVLHTNVVFKRDAHGQQMIFPYYGDVRGSIVYLEIDNRQCVQASSQCFQSATDVAAFLGALASLGSLNIPYKIEAVQSETVEPANSHHHHHH |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| A: ASP28 SER30 THR31 TYR49 PHE53 TYR55 SER56 SER67 PHE91 TYR92 THR93 B: THR28 SER30 SER31 TYR32 TRP33 ARG50 ASN52 PRO54 SER56 SER96 GLY97 PHE98 ARG99 X: GLY1447 VAL1463 CYS1464 SER1465 LEU1466 GLN1467 ASN1469 ASN1470 CYS1480 TRP1498 LYS1499 TYR1500 PHE1501 SER1502 ASP1503 HIS1505 ASP1507 ALA1708 SER1709 LEU1710 GLY1711 SER1712 ASN1714 ILE1715 PRO1716 TYR1717 LYS1718 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
