Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 5229 |
| PDBID: | 7UXL |
| Chains: | FE_R |
| Organism: | Homo sapiens, Plasmodium falciparum |
| Method: | XRD |
| Resolution (Å): | 2.86 |
| Reference: | 10.1016/j.immuni.2023.01.009 |
| Antibody | |
| Antibody: | RUPA-44 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Plasmodium falciparum gametocyte surface protein P45/48 |
| Antigen mutation: | Yes |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: F
Mutation: NULL
| >7UXL_F|Chain B[auth F]|RUPA-44 Fab Heavy chain|Homo sapiens (9606) QLQLQESGPGLVKPSETLSLTCTVSGGSISRSPYYWGWIRQPPGKGLEWFGSIYNNGSTYYNPPLKSRLTISVDTSKNQFSLKLSSVTAADTAVYYCARHGGSTGMKVVVIAPPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
Light Chain: E
Mutation: NULL
| >7UXL_E|Chain A[auth E]|RUPA-44 Fab Kappa chain|Homo sapiens (9606) DIQMTQSPATLSASVGDRVTITCRASQSISSWLAWYQQKPGEAPKLLIYKASSLQSGVPSRFSGSGSGTKFSLTISSLQPDDFATFYCQQYHSYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Antigen
Chain: R
Mutation: H18Y/G107L/I112V
| >7UXL_R|Chain C[auth R]|Gametocyte surface protein P45/48|Plasmodium falciparum (5833) EKKVIHGCNFSSNVSSKYTFTDSLDISLVDDSAHISCNVHLSEPKYNHLVGLNCPGDIIPDCFFQVYQPESEELEPSNIVYLDSQINIGDIEYYEDAEGDDKIKLFLIVGSVPKTTSFTCICKKDKKSAYMTVTIDSAGTKHHHHHH |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| Chain residues position delta_SASA
: residuesposition E: SER28 SER30 SER31 TRP32 LEU46 TYR49 LYS50 SER52 GLN55 SER67 GLY68 TYR91 F: ARG31 PRO33 TYR34 TYR52 ARG94 THR99 ASP101 TYR102 R: ASP312 SER313 LEU314 LEU318 VAL319 ASP320 ASP321 SER322 ALA323 HIS324 ILE325 SER326 CYS327 ASN328 VAL329 HIS330 GLU362 GLU363 LEU364 LYS416 SER418 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 6 Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 6 Å from any atom.
Interacting residues (Atom distance based)
