Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 4984 |
| PDBID: | 7T87 |
| Chains: | HL_A |
| Organism: | Staphylococcaceae, Mus musculus, synthetic construct |
| Method: | XRD |
| Resolution (Å): | 3.00 |
| Reference: | 10.1016/j.chom.2023.04.004 |
| Antibody | |
| Antibody: | 214 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Staphylococcaceae leukocidin B |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: H
Mutation: NULL
| >7T87_H|Chain D[auth H]|Antibody Fab B214 Heavy Chain|Mus musculus (10090) EVQLQQSGAELVKPGASVKISCKASGYAFSSSWMNWLKQRPGKGLEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYFCARYGYDYDGEYYYAMDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCHHHHHH |
Light Chain: L
Mutation: NULL
| >7T87_L|Chain C[auth L]|Antibody Fab B214 Light Chain|Mus musculus (10090) DIVMTQSPTTMAASPGERITITCSAHSNLISNYLHWYQQKPGFSPKLLIYRTSNLASGVPARFSGSGSGTSYSLTIGTMEAEDVATYFCQQGSSIPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
Antigen
Chain: A
Mutation: NULL
| >7T87_A|Chain A|Leukocidin B|Staphylococcaceae (90964) KINSEIKQVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHNVKFVKVLNDNEKK |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| L: ASP1 ASN28 LEU29 SER31 TYR33 GLY69 THR70 GLY92 SER93 SER94 ILE95 H: ALA28 SER30 SER31 TRP33 ARG50 TYR52 GLY54 ASP55 ASP57 ASN59 TYR60 LYS65 LYS74 ASP102 TYR103 ASP104 GLY105 GLU106 TYR107 TYR109 A: GLN31 ARG66 LEU68 ASP69 ARG79 SER83 SER85 GLN89 VAL91 ASP92 ASP93 ASP158 SER160 LYS169 GLU171 ARG184 GLN246 VAL248 HIS250 LYS252 SER254 GLU257 ASP278 LYS279 LYS280 GLU281 GLU282 LYS283 LEU287 LYS301 LEU303 ASN304 ASP305 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
