Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 2543 |
| PDBID: | 6NIP |
| Chains: | AB_E |
| Organism: | Homo sapiens, Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 |
| Method: | XRD |
| Resolution (Å): | 4.16 |
| Reference: | 10.1038/s41591-019-0746-2 |
| Antibody | |
| Antibody: | MZ1 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | ZIKV E glycoprotein |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: A
Mutation: NULL
| >6NIP_A|Chain A, E[auth H]|MZ1 Heavy chain|Homo sapiens (9606) QVQLQESGPGLVKSSETLSLSCTVSGASISNFYWSWVRQPPGKGLEWMGSIYYTGTITYNPSLKSRLTMSVDTSKNQFSLKLNSVTAADTAVYSCAGLDRFNWNDEGDCWGQGTLVTVFSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
Light Chain: B
Mutation: NULL
| >6NIP_B|Chain B, F[auth L]|MZ1 Light Chain|Homo sapiens (9606) QSVLTQPPSASGTPGQRVTISCSGSRSNLGRNTVNWYQQLPGVAPKLLIYSNNRRPSGVPDRFSGSKSDTSASLAISGLQSEDEADYFCAAWDDSLNGLYVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTEC |
Antigen
Chain: E
Mutation: NULL
| >6NIP_E|Chain C[auth E], D[auth Z]|Envelope protein E|Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013) (2043570) IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSGPLEVLFQGPGSAWSHPQFEKGGGSGGGSGGGSAWSHPQFEK |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| A: SER30 ASN31 TYR33 TYR53 PHE98 ASN99 B: LEU28 GLY29 ARG30 ASN31 THR32 TYR49 SER50 ASN51 ASN52 ARG53 LYS66 SER67 ASP68 E: GLU162 GLY181 GLY182 GLY184 LYS297 ARG299 LEU300 LYS301 GLY302 VAL303 SER304 TYR305 SER306 LEU307 THR309 THR335 ASP336 GLY337 PRO338 LYS340 THR366 GLU367 SER368 THR369 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
