Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 2408 |
| PDBID: | 6KRZ |
| Chains: | DE_A |
| Organism: | Homo sapiens, Mus musculus |
| Method: | XRD |
| Resolution (Å): | 3.05 |
| Reference: | 10.1038/s42003-020-01160-4 |
| Antibody | |
| Antibody: | A208 Fv |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | human adiponectin receptor 1 |
| Antigen mutation: | Yes |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: D
Mutation: NULL
| >6KRZ_D|Chain D, F, H|The heavy chain variable domain (Antibody)|Mus musculus (10090) EVLLQQSGPELVKPGASVRITCKASGYTFTDFNMDWVKQSPGKSLEWIGDFNPNSGGSIYNQKFKDKATFTVDKSSSTAYMELRSLTFEDTAVYYCARETGTAWFAYWGQGTLVTVSAA |
Light Chain: E
Mutation: NULL
| >6KRZ_E|Chain E, G, I|The light chain variable domain (Antibody)|Mus musculus (10090) DIQMTQSPASLSASVGETVTITCRASGNIHNFLAWYQQKQGKSPQVLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQQFWSTPYTFGGGTKLEIN |
Antigen
Chain: A
Mutation: D138A
| >6KRZ_A|Chain A, B, C|Adiponectin receptor protein 1|Homo sapiens (9606) MDYKDDDDKENLYFQGGSEGRWRVIPYDVLPDWLKDNDYLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGFVLFLFLGILTMLRPNMYFMAPLQEKVVFGMFFLGAVLCLSFSWLFHTVYCHSEKVSRTFSKLAYSGIALLIMGSFVPWLYYSFYCSPQPRLIYLSIVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEGFVKATTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGGCTDDTLL |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| Chain residues position delta_SASA
: residuesposition D: THR30 ASP31 PHE32 ASN33 TRP47 ASP50 ASN52 ASN54 ILE59 ARG98 THR100 GLY101 THR102 TRP104 E: HIS30 ASN31 PHE32 TYR49 ASN50 LYS52 PHE91 TRP92 SER93 THR94 TYR96 A: SER0 GLU89 GLY90 ARG91 TRP92 ARG93 VAL94 ILE95 PRO96 VAL99 HIS112 PRO116 PRO117 MET118 PRO119 SER120 ARG122 ALA123 LYS199 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 6 Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 6 Å from any atom.
Interacting residues (Atom distance based)
