Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 1605 |
| PDBID: | 5NJ6 |
| Chains: | HL_A |
| Organism: | Homo sapiens, Escherichia coli, Mus musculus |
| Method: | XRD |
| Resolution (Å): | 4.00 |
| Reference: | 10.1038/nature22309 |
| Antibody | |
| Antibody: | 3949 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Proteinase-activated receptor 2 |
| Antigen mutation: | No |
| Durg Target: | P0ABE7 |
Sequence information
Antibody
Heavy Chain: H
Mutation: NULL
| >5NJ6_H|Chain B[auth H]|Fab3949 H|Mus musculus (10090) EVILVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISGIGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSEDTAMYYCSRQDYYGSSYDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR |
Light Chain: L
Mutation: NULL
| >5NJ6_L|Chain C[auth L]|Fab3949 L|Mus musculus (10090) QIVLTQSPAIMSASLGERVTMTCTASSSISSSYLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQFHRSPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN |
Antigen
Chain: A
Mutation: NULL
| >5NJ6_A|Chain A|Proteinase-activated receptor 2,Soluble cytochrome b562,Proteinase-activated receptor 2|Homo sapiens (9606) MVETVFSVDEFSASVLTGKLTTVFLPIVYTIVFVVALPSNGMALWVFLFRTKKKAPAVIYMANLALADLLSVIWFPLKIAYHIHGNNWIYGEALCNVLIGFFYANMYCSILFLTCLSVQRAWEIVNPMGHSRKKANIAIGISLAIWLLILLVTIPLYVVKQTIFIPALQITTCHDVLPEQLLVGDMFNYFLSLAIGVFLFPAFLTASAYVLMIRALADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLENSEKKRKRAIKLAVTVAAMYLICFTPSNLLLVVHYFLIKSQGQSHVYALYIVALCLSTLNSCIDPFVYYFVSHDFRDHAKNALLCRSVRTVKQMQVSLTSKAAAHHHHHHHHHH |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| H: SER30 SER31 TYR32 ALA33 SER52 GLY53 ILE54 TYR57 TYR59 GLN99 ASP100 TYR101 TYR102 GLY103 SER104 L: SER27 ILE28 SER29 SER30 SER31 TYR32 TYR49 SER50 ASN53 GLY68 PHE91 HIS92 SER94 TYR96 A: PHE59 SER60 VAL61 ASP62 GLU63 PHE64 ALA66 SER67 THR70 PRO219 ALA220 LEU221 GLN222 GLU232 GLN233 LEU234 VAL236 ILE314 LYS315 SER316 GLN317 GLY318 GLN319 HIS321 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
