Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 1570 |
| PDBID: | 5MEV |
| Chains: | HL_A |
| Organism: | Mus musculus, Homo sapiens |
| Method: | XRD |
| Resolution (Å): | 2.94 |
| Reference: | 10.1021/acsmedchemlett.6b00464 |
| Antibody | |
| Antibody: | MCL1 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Induced myeloid leukemia cell differentiation protein Mcl-1 homolog |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: H
Mutation: NULL
| >5MEV_H|Chain B[auth H]|Fab Heavy Chain|Homo sapiens (9606) QVTLKESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISSSSSYIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARQVGATWAFDIWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCAAAENLYFQ |
Light Chain: L
Mutation: NULL
| >5MEV_L|Chain C[auth L]|Fab Light Chain|Homo sapiens (9606) QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAPKLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSLNAWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHTVEKSLSRADCAAAENLYFQGS |
Antigen
Chain: A
Mutation: NULL
| >5MEV_A|Chain A|Induced myeloid leukemia cell differentiation protein Mcl-1 homolog,Induced myeloid leukemia cell differentiation protein Mcl-1|Mus musculus (10090) GPLGSEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGG |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| H: PHE27 THR28 SER30 SER31 TYR32 SER33 SER50 SER52 SER53 SER54 SER56 TYR57 TYR59 ASN74 ARG98 GLN99 GLY101 ALA102 TRP104 L: SER31 ASN32 TRP92 ASP94 ASN97 TRP99 A: LEU174 GLN177 ALA204 ALA205 ARG208 VAL307 LYS308 GLN309 ARG310 GLY311 ASP313 VAL316 GLU317 PHE318 HIS320 GLU322 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
