Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 1559 |
| PDBID: | 5LXG |
| Chains: | HL_A |
| Organism: | Homo sapiens, Mus musculus |
| Method: | XRD |
| Resolution (Å): | 2.73 |
| Reference: | 10.1038/nature21714 |
| Antibody | |
| Antibody: | anti-ADIPOR Fv |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | Adiponectin receptor protein 1 |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: H
Mutation: NULL
| >5LXG_H|Chain B[auth H]|V REGION HEAVY CHAIN|Mus musculus (10090) EVLLQQSGPELVKPGASVRITCKASGYTFTDFNMDWVKQSPGKSLEWIGDFNPNSGGSIYNQKFKDKATFTVDKSSSTAYMELRSLTFEDTAVYYCARETGTAWFAYWGQGTLVTVSAA |
Light Chain: L
Mutation: NULL
| >5LXG_L|Chain C[auth L]|V REGION LIGHT CHAIN|Mus musculus (10090) DIQMTQSPASLSASVGETVTITCRASGNIHNFLAWYQQKQGKSPQVLVYNAKTLADGVPSRFSGSGSGTQYSLKINSLQPEDFGSYYCQQFWSTPYTFGGGTKLEIN |
Antigen
Chain: A
Mutation: NULL
| >5LXG_A|Chain A|Adiponectin receptor protein 1|Homo sapiens (9606) MDYKDDDDKENLYFQGGSEGRWRVIPYDVLPDWLKDNDYLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGFVLFLFLGILTMLRPNMYFMAPLQEKVVFGMFFLGAVLCLSFSWLFHTVYCHSEKVSRTFSKLDYSGIALLIMGSFVPWLYYSFYCSPQPRLIYLSIVCVLGISAIIVAQWDRFATPKHRQTRAGVFLGLGLSGVVPTMHFTIAEGFVKATTVGQMGWFFLMAVMYITGAGLYAARIPERFFPGKFDIWFQSHQIFHVLVVAAAFVHFYGVSNLQEFRYGLEGGCTDDTLL |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| H: THR30 ASP31 PHE32 ASN33 ASP50 ASN52 ASN54 ILE59 ARG98 GLU99 THR100 GLY101 THR102 ALA103 TRP104 TYR107 L: HIS30 ASN31 PHE32 TYR49 ASN50 LYS52 THR53 PHE91 TRP92 SER93 THR94 TYR96 A: SER0 GLU89 GLY90 ARG91 TRP92 ARG93 VAL94 ILE95 PRO96 VAL99 PRO101 TRP103 HIS112 PRO116 PRO117 MET118 PRO119 SER120 ARG122 ALA123 HIS196 SER197 LYS199 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
