Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 1158 |
| PDBID: | 4ZPV |
| Chains: | AB_S |
| Organism: | Mus musculus, Betacoronavirus England 1 |
| Method: | XRD |
| Resolution (Å): | 3.20 |
| Reference: | 10.1038/ncomms8712 |
| Antibody | |
| Antibody: | D12 Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | MERS Co-V RBD |
| Antigen mutation: | No |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: A
Mutation: NULL
| >4ZPV_A|Chain A, F[auth H]|D12 Fab Heavy chain|Mus musculus (10090) EVKLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAENTLYLQMSSLRSEDTAMYYCVRDGNSMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR |
Light Chain: B
Mutation: NULL
| >4ZPV_B|Chain B, E[auth L]|D12 Fab light chain|Mus musculus (10090) DIQMTQTTSSLSASLGDRVTIICRASQDINNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGSDYSLTISNLEQEDIATYFCQQANTLPPTFGAGTKLELRRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
Antigen
Chain: S
Mutation: NULL
| >4ZPV_S|Chain C[auth R], D[auth S]|Spike glycoprotein|Human coronavirus EMC (isolate United Kingdom/H123990006/2012) (1263720) VECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRFLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKL |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| B: GLN27 ASP28 ASN30 TYR32 LEU46 TYR49 TYR50 ARG53 LEU54 HIS55 SER56 SER60 ALA91 ASN92 THR93 LEU94 PRO96 A: SER31 TYR32 ALA33 THR50 SER52 GLY53 THR55 TYR56 TYR58 ARG94 ASP95 GLY96 ASN97 SER98 ASP101 S: GLY391 THR392 PRO394 ASN398 PHE399 LYS400 LEU495 LYS496 PRO525 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 TRP535 GLU536 ASP537 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 LEU548 GLU549 LEU554 THR560 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
