Details
Structure visualisation
Entry information
| Complex | |
| AACDB_ID: | 1083 |
| PDBID: | 4XWO |
| Chains: | QR_N |
| Organism: | Saccharomyces cerevisiae S288C, Homo sapiens, synthetic construct, Saccharomyces cerevisiae |
| Method: | XRD |
| Resolution (Å): | 2.75 |
| Reference: | 10.1126/science.1261671 |
| Antibody | |
| Antibody: | 4XWO Fab |
| Antibody mutation: | No |
| INN (Clinical Trial): | |
| Antigen | |
| Antigen: | ATPase GET3 |
| Antigen mutation: | Yes |
| Durg Target: | |
Sequence information
Antibody
Heavy Chain: Q
Mutation: NULL
| >4XWO_Q|Chain C, E, I, K, O, Q, U, W|Antibody heavy chain|HOMO SAPIENS (9606) EISEVQLVESGGGLVQPGGSLRLSCAASGFNLYYYSIHWVRQAPGKGLEWVASISPYSSSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGRWYRRALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT |
Light Chain: R
Mutation: NULL
| >4XWO_R|Chain D, F, J, L, P, R, V, X|Antibody light chain|HOMO SAPIENS (9606) SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYPYYSSLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Antigen
Chain: N
Mutation: D57N
| >4XWO_N|Chain A, B, G, H, M, N, S, T|ATPase GET3|Saccharomyces cerevisiae (ATCC 204508 / S288c) (559292) MDLTVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTNPAHNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELEDKE |
Interaction
1、Solvent accessible surface areas (SASA) were calculated (Naccess V2.1.1) for each residue in antibody and antigen, respectively. The residues with SASA loss in binding of more than 1Å2 were classified as interacting residues.
Interacting residues (ΔSASA based)
| Q: TYR33 TYR34 TYR57 SER58 SER59 SER60 TRP104 TYR105 ARG106 ARG107 R: VAL30 SER31 SER32 ALA33 TYR50 SER51 ARG67 GLY69 PRO93 TYR94 TYR95 N: ASP2 LEU3 PHE246 LEU249 TYR250 GLU253 ARG254 ILE256 GLN257 ILE260 ASP265 VAL266 ASN267 GLN301 ILE302 GLU304 LEU305 TYR306 GLU307 ASP308 PHE309 |
2、We defined interacting paratope-epitope residues by a distance cutoff of < 5Å . Two amino acids are considered as interacting residues if they have at least one atom within a distance of 5 Å from any atom.
Interacting residues (Atom distance based)
