HMMCAS

 

HMMCAS

Welcome to HMMCAS home page! HMMCAS is a program to identify Cas proteins in archaea and bacteria proteome. You can also use this web tool to find Cas proteins in your interested proteome such as giant virus. This page provides access to HMMCAS. Users are advised to use this complete proteome (NC_016025.faa) to be familiar with our network services. Directly copy the 826 proteins in the Candidatus Chloracidobacterium thermophilum B into the input field, or save these proteins as a file ended with .faa, .fasta or .txt and then upload this file.

   Input sequence  
 
Paste in your sequence or use the example

Or, upload file:
 
   Model options  
All models (default 163 HMMs)
TIGRFAM & PFAM models (139 HMMs)
TIGRFAM models (101 HMMs)
PFAM models (38 HMMs)
Zhang's models (24 HMMs)
 
   Cut-Offs  
Use the gathering threshold.
Significance E-values:   Sequence:    Hit: 
Report E-values:   Sequence:    Hit: 
Significance bit scores:   Sequence:    Hit: 
Report bit scores:   Sequence:    Hit: 
 
   Filters  
 
   Action 


HLAB | Center of Bioinformatics | KLNME | UESTC | Chengdu, 610054, China