2076 LSIPPKA LSRPPMP L-S-x-P-P-x(2) 2 Phage display (subtractive panning) 5 PMID:11230317 LOX-1 Oxidized low-density lipoprotein Not determined. Not determined. Ph.D.-7 phage display library (X7) A clearing step on LZRS-b-gal-transfected hepG2 cells was performed before incubation and recovery from LZRS-LOX-1-transfected cells. 2077 LTPATAI LTPARAT L-T-P-A-x-A-x 2 Phage display (subtractive panning) 5 PMID:11230317 LOX-1 Oxidized low-density lipoprotein Not determined. Not determined. Ph.D.-7 phage display library (X7) A clearing step on LZRS-b-gal-transfected hepG2 cells was performed before incubation and recovery from LZRS-LOX-1-transfected cells. 2078 VSNSNWPSFPSS(6) 1 Phage display (common panning) 8 PMID:11245619 PMCA398 Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) 2079 MCPKHPLGC(3) LCPKHPLGC(2) x-C-P-K-H-P-L-G-C 2 Phage display (common panning) 4 PMID:11498772 U87-MG glioma cells Not determined. Not determined. Not determined. CMTI phage display library 2080 ECHKSPKEC PCTKPHMGC WCITYPEGC QCFKNDSGC SCVKFPEEC PCPTDHQEC VCATSGLKC 7 Phage display (common panning) 4 PMID:11498772 U87-MG glioma cells Not determined. Not determined. Not determined. CMTI phage display library 2081 RVVCEYVFGRGAVCS(8) GCCFLVGGLCYSTCA(2) 2 Phage display (competitive panning) 3 PMID:11522014 von Willebrand factor, vWF Type I collagen Not determined. Not determined. LX15 phage display library The bound phages were specifically eluted with fibrillar human collagen type I (100 ????g/ml). After amplification of the phages, two additional rounds of panning were performed. 2082 HTSTYWWLDGAP[1.602 ± 0.039] HQLPQYWWLSPG[1.094 ± 0.033] YWWL 2 Phage display (competitive panning) 3 PMID:11581662 [PA63]7 complex Protective antigen, PA Not determined. Not determined. Ph.D.-12 phage display library (X12) ELISA ELISA was done to assess the specificity of phages displaying different peptides, or the unselected PhD12 library as a negative control. Absorbance at 450 nm was determined, reproduced from the graph and shown. The absorbance of the negative control was 0.200 ± 0.018. Phage encoding peptides were eluted in the each round of biopanning using PBS and intact PA. The P1(HTSTYWWLDGAP) and P2(HQLPQYWWLSPG) peptides share the hydrophobic sequence YWWL; this commonality suggests that this tetrapeptide may play a role in binding to PA63. 2083 CGNKRTRGC 1 Phage display (in vivo) 4 PMID:12053175 Mice carrying human MDA-MB-435 breast carcinoma xenografts Not determined. Not determined. Not determined. CX7C T7 phage display library For the ex vivo screening, MDA-MB-435 human breast carcinoma xenograft tumors cell suspension was incubated with the phage library. The phage selection process was repeated 3 times. Then the ex vivo pre-selected phage pool was then subjected to an in vivo selection round by injecting it into the tail vein of a nude mouse bearing an MDA-MB-435 tumor. 2084 QIDRWFDAVQWL(24) 1 Phage display (subtractive panning) 5 PMID:12082461 Human melanoma cell line MeWo Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) Three subtractions with HeLa cells before the first selection on WiDr cells. No further subtractions were done before the four next selections. 2085 HEWSYLAPYPWF(13) 1 Phage display (subtractive panning) PMID:12082461 Human melanoma cell line MeWo Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) Three subtractions with HeLa cells before the first selection on WiDr cells, and three subtractions with 293 cells before each of the subsequent four selections on the WiDr cells. Twenty-four phages were isolated from the library and thirteen of them harbored the same peptide sequence (HEWSYLAPYPWF). 2086 YQATPARFYTNT(4) 1 Phage display (subtractive panning) PMID:12082461 Human breast cancer cell line MDA-MB-231 Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) Three subtractions with HeLa cells before the first selection on MDA-MB-231 cells, and three subtractions with 293 cells before each of the subsequent four selections on the MDA-MB-231 cells. Six phages were isolated from the library and four of them habored the same peptide sequence YQATPARFYTNT. 2087 CGWMGLELC(11) 1 Phage display (subtractive panning) 5 PMID:12082461 Human breast cancer cell line MDA-MB-231 Not determined. Not determined. Not determined. Ph.D.-C7C phage display library (CX7C) Three subtractions with 293 before each of the four subsequent selections on MDA-MB-231 cells. Fourteen phages were isolated from the library and eleven of them possessed the petide sequence CGWMGLELC. 2088 CISPDAHSC(9) CTLSHTRTC(1) 2 Phage display (common panning) 5 PMID:23128437 Anti-CK 8/18 complex monoclonal antibody Cytokeratin (CK) 8/18 complex Not determined. Not determined. Ph.D.-C7C phage display library (CX7C) ELISA The reactivity of selected phages against K94 antibody was examined by phage ELISA. Empty phage (Eph) without an insert peptide sequence and XC20p1 phage were used as control antigens and other HCC-derived auto antibodies (XC20 and XC90) were used as control antibodies. Results showed that K94p1 mimotope phage (displaying CISPDAHSC) showed high reactivity to K94. Other phages expressing peptide sequences of CTLSHTRTC (K94p7), CLSIGMPGC (XC20p1), or phage without the insert peptide sequence (Eph) showed no binding to K94. 2089 SLHYSRDQLVAL 1 Phage display (common panning) 3 PMID:23094039 Eukaryotic initiation factor (eIF)4E Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) Biotinylated full length eIF4E was loaded onto 10 ml of steptavdin M280 magnetic Dynabeads (Invitrogen). Each selection was performed on the beads. 2090 TMGANLGLESPE(1) TMGANLGLKWPV(5) TTGANLGPKWPV(1) TMGANLGLKWPV 3 Phage display (common panning) 3 PMID:23193370 Zinc oxide, ZnO Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) 2091 FWLPSPT WWRPPVL WWKYPPQ YWFPAPP SWFPLRS YWLPYFS WWLPPGS W-x-P 7 Phage display (common panning) 4 PMID:23119051 Karilysin catalytic domain, Kly18 Not determined. Not determined. Not determined. Ph.D.-7 and Ph.D.-C7C phage display library pool 2092 HRHRRRE HKHRRRD HRHRRRE HKHRRRD H-[RK]-H-R-R-R-[ED] 4 Phage display (common panning) 3 PMID:23033479 Calretinin, CR Not determined. Not determined. Not determined. Ph.D.-7 phage display library (X7) A consensus CR-binding sequence, H(R/K)HRRR(E/D), consisting of five or six basic residues (His/Arg) flanked by an acidic (Glu/Asp) residue was identified. 2093 STFCLLGQKDQSYCFTI(2) HMRCLHYKGRRVCFLL(5) KTMCLRYNHDKVCFRI(2) LVLCLVHRTSKHRKCFVI(1) 4 Phage display (common panning) 5 PMID:23076147 Human IgA, hIgA Not determined. Not determined. Not determined. X3CX7-10CX3 T7 phage display library 2094 FVSRSNSLLGLLLDGAINP VNPVSSRLIALLYDDVNDG HRLLVNSLDVLLSVDGPNL SFTSTGLLNILLSATNADS FRNGCFNLYRLLDSNFAAN PYRHRALLGFLLNDFSDHH CRYHSIILSHLLSSGDYSH RNFSRNILYNLLHCPLNDN DIFSSSNLSRLLSSPYYPG RDSRHCSLSSLLSGGCSVI FASGHSTLRDLLCNGGSYS SSCGTSRLCSLLNYSVVYS ADFPSATLNRLLLCYSNNL VGRSHFALGTLLSRDFALC VRRYSFHLAALLSSASGGH GDGADRFLFNLLVSGGSIH ACDISHSLRYLLLHSCGSS LPPASSLLFNLLHSSNINY FGIGTSALGHLLSASGCRS GSYNSPNLRCLLVGRDSCR CSDGGSILTLLLCSNVSRA GTDGRCTLRCLLTRPYSNP PCRSSSVLYHLLSSRGYGF SAISGSFLYNLLSSRVYSN GRVSGSRLRDLLRSYPAHT VLGVHHSLSNLLRGSLYTS AVGNNSTLFNLLRNTNHYV INRPGTDLARLLRYSISVS VVVYTNILHNLLSRNNTNF RTSNVSRLFSLLSRSSLAF LDRVRGILFNLLGTPFRSV L-x-x-L-L 31 Phage display (common panning) 3-4 PMID:22930062 Unphosphorylated ERα LBD Estrogen Not determined. Not determined. X7-LXXLL-X7 T7 phage display library 2095 DHHTNGSLYFLLSNNGDNN HRLLVNSLDVLLSVDGPNL FSVAIGNLGTLLVLDLDRN AFNRPSFLFNLLTSDTHSL PYRHRALLGFLLNDFSDHH FSVNSFRLYHLLATSHGTD APSPHVNLISLLTSSSSSG PIHGSSILHNLLSGNFTAF FASGHSTLRDLLCNGGSYS SSCGTSRLCSLLNYSVVYS TDFHFCTLSPLLDVTRYSY IGCRFHYLSGLLPFGGPTF VYCVGSRLYYLLSSNCHPS VRRYSFHLAALLSSASGGH RDARPSALYRLLSRHHDGC SYTSHSTLACLLIGRDVHN YTVHFGDLRCLLDRPFCHS CSDGGSILTLLLCSNVSRA GTDGRCTLRCLLTRPYSNP PCRSSSVLYHLLSSRGYGF AVTAHSRLYALLGVGYPYR GRVSGSRLRDLLRSYPAHT FHDPHGTLFGLLSGRSSFG NIPANSVLFNLLSAGVNHR GSYNNGALFDLLIPSTRST GSYNNGALFDLLIPSTRST DTVCFSRLRRLLISSHHNR 27 Phage display (common panning) 3-4 PMID:22930062 Phosphorylated ERα LBD, ERα LBD-P Estrogen Not determined. Not determined. X7-LXXLL-X7 T7 phage display library 2096 AISRGRVLISLLHDHYDSL(1) CSDGGSILLLLLCSNVSRA(1) CSDGGSILTLLLCSNVSRA(1) DCVGARTLVALLNDCDAVV(1) DDGSHIALHPLLFGHLVPF(1) DNVTGIFLHSLLLGNDPVG(1) FASGHSTLRDLLCNGGSYS(2) FPASYTTLRSLLVGYADSF(1) FVSASSVLFTLLNARSSGV(1) GRVSGSRLRDLLRSYPAHT(1) GTDGRCTLRCLLTRPYSNP(2) IIDDHGSLLSLLPLIGTSF(1) INRPGTDLARLLRYSISVS(1) LDDHHGLLTHLLGDYSYSF(1) LTGRRNVLTALLFDGSLVG(1) NAFLRGFLADLLAFPSNHR(1) NDYSHGRLRHLLNDFCTGF(1) PCRSSSVLYHLLSSRGYGF(1) PYRHRALLGFLLNDFSDHH(1) RAVCFRSLAYLLTDGRSVN(1) RAVCFRSLXYLLTDGRSVN(1) SGRIGSALICLLSGPTDVS(1) SHDNRNDLCYLLRSTNVCF(1) SNHPGVNLRYLLHNVHSNF(1) SRIHGNFLFHLLSGNVGSN(1) SSCGTSRLCSLLNYSVVYS(1) VALHGNNLSFLLGHSTGHS(1) VFARVPSLDILLDFGCGLP(1) VNPVSSRLIALLYDDVNDG(1) VRRYSFHLAALLSSASGGH(1) VSSTNNTLRHLLSAAGYYG(1) VSTARLRLSSLLGNSYGLG(1) YFSYSSILDRLLSIDGDYH(1) YGRLSYNLVSLLGSVGSHN(1) YLHTRHFLISLLSDDGPNN(1) YPDTHLLLYSLLLPDSANA(1) 38 Phage display (common panning) 3-4 PMID:22930062 Unphosphorylated ERβ LBD Estrogen Not determined. Not determined. X7-LXXLL-X7 T7 phage display library 2097 VNPVSSRLIALLYDDVNDG YSSGSCILHCLLDSNLCDC HTCGSSILLGLLNVDCSYD VPLFDCYLSVLLDPGLPVN CSPFLINLSRLLLIPDFNL SDGFGTLLIGLLYDFVGNP RGAVGSSLVCLLTYSDNVC ALNSNVGLVRLLLRDDFSS PYRHRALLGFLLNDFSDHH TYNYHPLLVSLLGANFDGH PIHGSSILHNLLSGNFTAF RVPNLGILGRLLFGGATIP APGRVFSLGRLLNSSSFVS FASGHSTLRDLLCNGGSYS YLSNYHNLIRLLGRASYDP YRPCHLSLISLLNHDSHLN RNHISPGLFYLLPYRNIID VRRYSFHLAALLSSASGGH RLHDISFLEYLLSGSGHVV CFALVSRLFCLLVCTISHA CGHVDGLLSALLGYPVPCR CSDGGSILTLLLCSNVSRA GYAYRSNLNFLLGSNCRNF SSFCFGSLYSLLATHRCSS GTDGRCTLRCLLTRPYSNP PCRSSSVLYHLLSSRGYGF SAISGSFLYNLLSSRVYSN ICSNSSRLSDLLVSSSYLR GGNRFSPLYRLLVRYGSNS GRVSGSRLRDLLRSYPAHT FDVTSSGLASLLTRVFSFS SDFNRAILNRLLVIVRSGT FVSASSVLFTLLNARSSGV NAFLRGFLADLLAFPSNHR 34 Phage display (common panning) 3-4 PMID:22930062 Phosphorylated ERβ LBD, ERβ LBD-P Estrogen Not determined. Not determined. X7-LXXLL-X7 T7 phage display library 2098 SWFHPQRRHSHQ SWMPHPRWSPQH MHRAPSTHKLLP ASWHQHYMKHKP SEFHRHGDKEHK CEFPRSWDMETN SLTRHKPEPHRK SLTWHKHELHRK SPPWHKHELHRK GGWHKHISRSDP YHKHPHTYHNFK HPKHPHTHTNDQ HMHMHQHVAWTQ HMGMTKINYSAL SNYSDVKRLPTV SVNWQKQTISNL 16 Phage display (common panning) 3 PMID:23053512 Anti-PI-LPS monoclonal antibody 1E4 Phase I LPS, PI-LPS Not determined. Not determined. Ph.D.-12 phage display library (X12) 2099 ETYAGNG(3) QLPNRTV(3) HLAALEY(2) AATVISR(2) VTSPLLI(2) QPRSPSA(2) TQPRYPL(2) SDTLPKM(2) LPRLAMN(2) TTWNPLD(2) RAPFVSY(2) GKPAHPT(2) ASSLLNG(1) HPKWHPS(1) KSPLAPL(1) VNLGTRQ(1) SSHSNLQ(1) TSFSVLA(1) NFTSRPT(1) NYTSQLT(1) VMATIAP(1) YATHLPA(1) YATDPHK(1) YIHAPAP(1) LVTSPSP(1) VLRPNLP(1) DPTLPLN(1) HPSLPKL(1) NTRLPMP(1) HNTTWSS(1) RVPTWPS(1) VSEVARV(1) MSENPRT(1) APLVRLP(1) KGALPIY(1) HIPYDPP(1) NPPSLWA(1) YSGKHSS(1) HMSKAFH(1) 39 Phage display (common panning) PMID:23104667 Bone marrow-derived dendritic cells, BMDCs Not determined. Not determined. Not determined. Ph.D.-7 phage display library (X7) 2100 CQPAPGKQC(4) CNPASSQLC(3) CSKSSDYQC(2) CTQKSGPVC(2) CTADQQRQC(2) CTHSSLHGC(2) CNVQNTRNC(2) CSQLSAHSC(2) CLTNFHRTC(2) CTPASARSC(2) CQLDHLKAC(2) CTKYQATMC(2) CYEHGKPLC(2) CHGKPSANC(2) CSTMRSPTC(1) CSTKNYREC(1) CHERQVHAC(1) CSNSNPKSC(1) CLPSAQMTC(1) CPKNGSDPC(1) CNDAAWQQC(1) CTLPLSPAC(1) CQPHKAKSC(1) CIPNAAARC(1) CLGQPYHTC(1) CVPGHRGTC(1) CQSPKNTTC(1) CPLQDPLRC(1) CNHGSFMHC(1) CGNSAHRSC(1) CLEATQKHC(1) CTTPGNLQC(1) CNPTATPLC(1) CITQKQAAC(1) CTSTVRPSC(1) CPGLHTTQC(1) CKTPGPATC(1) CSHESHRQC(1) CTSRPMAAC(1) CVGHKPQSC(1) CPANGAMHC(1) CNQGPVPSC(1) CSQTHGQPC(1) CPHQGSPLC(1) CHATAQATC(1) CWSVNQPFC(1) CLMTPTHTC(1) CLNSKLSHC(1) CTRLAQNTC(1) CSTSSTSLC(1) CPKSLKNTC(1) CHQAANSTC(1) CDTPITPAC(1) CQPMNSLTC(1) CSFSQNGEC(1) CTTTKIALC(1) CNQAILYKC(1) CSSSPSGGC(1) CQARLTAQC(1) CHPNTADYC(1) CPTNSINGC(1) CHSSPTRQC(1) CQAKSQGSC(1) CERWHNKHC(1) CTGASHQKC(1) CTMQNAMTC(1) CATPHHRVC(1) CDPKSMPKC(1) CNTQTTKIC(1) CAPSSKSLC(1) CSTKMLPRC(1) CKEHASVHC(1) CNDQARQIC(1) CMAGTPTNC(1) CDKGRTQLC(1) CRTPNHNTC(1) CQGPSLMAC(1) CTTSKSLMC(1) CTNSDTRHC(1) CSSAEAFSC(1) CHAPQLRHC(1) CSPHTPSLC(1) CPPTTMHAC(1) CDGLNSKNC(1) CATSYGLPC(1) CQPHHSPVC(1) CKSPVHGQC(1) CMNPSQSSC(1) CGLAVNSTC(1) CTGPHSFHC(1) CNLTNKALC(1) CPTGALDFC(1) CGTNSTPTC(1) CTWEQKKIC(1) CDLKHPASC(1) CKPSKLDIC(1) CDSHKDLKC(1) CPNNLASSC(1) CYAPGKSHC(1) CSYSPLHLC(1) CSLTSSRTC(1) CMNTMAAAC(1) CFSSTPTRC(1) CSYPMPKMC(1) CGYLAHSAC(1) CTPSPGEVC(1) CSTTSHRLC(1) CSEGYTSHC(1) CTSHSHPLC(1) CDMSDRSLC(1) CNGERTGQC(1) CKSTAPHLC(1) CPYQAQKPC(1) CSINRDRLC(1) CLPNNRASC(1) CPALQESKC(1) CMTTPTAHC(1) CDNPQFSSC(1) CELGPSRSC(1) CSEKWSKVC(1) CMGAKAPTC(1) CTNPATTQC(1) CDLSRTALC(1) CPTLKSSAC(1) CSHQGYNTC(1) CTSSQHTNC(1) CESPNSLKC(1) CPKPGATEC(1) CPKTPSNLC(1) CSSTAMGLC(1) CSPLSPRQC(1) CRQGSLPNC(1) CEMPGAMRC(1) CTDKAGPNC(1) CTNPKGVLC(1) CRVPSGSQC(1) CPTPKISAC(1) CSSSNPYFC(1) CSPRHANTC(1) CDATSAQLC(1) CKDHQTPTC(1) CVHMSRNYC(1) CHAYHKSNC(1) CLHHSLHMC(1) CPPQKGGRC(1) CQTNHTPSC(1) CNQTSLSAC(1) CGTLHKYPC(1) CTDMFRSLC(1) CSRTSDYQC(1) CMPNTKPLC(1) CDQDQGHTC(1) CDMKQGPSC(1) CDFRMQNQC(1) CTSTNSQHC(1) CPNNLASLC(1) CHNINTKQC(1) CMPDSTKQC(1) CNHSLPKNC(1) CPLSQPRPC(1) CPLSPSTLC(1) CTSGAERSC(1) CNKSLNPQC(1) CLVRQVAQC(1) CPLGKLQTC(1) CQANPLAMC(1) CPTAPNHSC(1) CSDPSRMRC(1) CSARHTAHC(1) CPLNDPSIC(1) CSPTTPKQC(1) CTPESKAMC(1) CVSASVRQC(1) CHPLLKAPC(1) CQVMSSKQC(1) CTQTKTFTC(1) CPFTFAPTC(1) CNASDNGLC(1) CNAESPMFC(1) CTSHQRPHC(1) CPTESYMLC(1) CIKTEGQHC(1) CLKSPRPDC(1) CTDTLRPAC(1) CYASTRLQC(1) CTAQAIYPC(1) CKASTPQAC(1) CHIPGPHRC(1) CETDSNAVC(1) CRNAPYPNC(1) 190 Phage display (in vivo) PMID:23104667 Mouse kidney Not determined. Not determined. Not determined. Ph.D.-C7C phage display library (CX7C) The library prepared in 500 μl PBS was orally administered into starved male SD rats using an oral zonde, before they were lethally anesthetised after 1 h of retention and again perfused via the left heart ventricle with DMEM supplemented with 1% heparin to remove circulating blood from the organs.