301 ELDEYMEYE(5) PVRCYVRGS(2) RIPVYVDAR(2) SIDDYVYGL(2) RIPVYCDAS(1) 5 Phage display (common panning) 3 PMID:14715298 PTP1B-GST fused protein Not determined. Not determined. Not determined. X4YX4 phage display library 302 QPSYTVPIPRHA(10) QPSYTVPIARHA(1) QPSYTVRIARHA(1) SPSYDIRVPRGW(1) DSSPDYTFTSAR(1) 5 Phage display (common panning) 4 PMID:15530735 Anti-gE monoclonal antibody 14B11 Envelope glycoprotein E, gE Not determined. Not determined. Ph.D.-12 phage display library (X12) 303 TVFPPWHLLNNA(5) SVSVGMKPSPRP(4) SVSVGMKPRPRP(2) SVSAGRKPRPRP(1) TVFPAWHLLNNP(1) 5 Phage display (common panning) 4 PMID:15530735 Anti-gE monoclonal antibody 13E8 Envelope glycoprotein E, gE Not determined. Not determined. Ph.D.-12 phage display library (X12) 304 YEPWWAGKVRHL(8) SVSVGMKPSPRP(5) SVPVGMKPRPRP(1) SGWSHLYWWTHD(1) 4 Phage display (common panning) 4 PMID:15530735 Anti-gE monoclonal antibody 17C9 Envelope glycoprotein E, gE Not determined. Not determined. Ph.D.-12 phage display library (X12) 305 SVSVGMKPSPRP(2) SHHMQHGPWMFV(2) APTHWCYYPPLI(2) SVSVGKKPSPRP(1) SVSVGLKPSPRP(1) SDQLLLLSSANW(1) SVSVGMKPRPRP(1) ACDQMECYPPLV(1) ASDQMECYPPLV(1) APTHWFYYPPLI(1) APTHWYYYPPLI(1) 11 Phage display (common panning) 4 PMID:15530735 Anti-gE monoclonal antibody 8G11 Envelope glycoprotein E, gE Not determined. Not determined. Ph.D.-12 phage display library (X12) 306 SGFDPLITHA(3) SDWDPLFTHK(2) MAEVLENSVG(2) MAEVLQKESG(1) MAEVKLNSSG(1) TLKFVDSWGL(1) 6 Phage display (common panning) 4 PMID:15033456 Amino acid 27-135 of SLAM Hemagglutinin glycoprotein Not determined. Not determined. X10 phage display library 307 CSRLGRSSAWVC(9) CPFWVRGTTWC(2) CRLTENTEPLLC(2) CTHWQLGERPDC(1) CPSTPGERVRHC(1) CRGGPDDLTALC(1) CPSTPGSRQNMC(1) CPSTPGDNPLVC(1) CKFVVNGRWIDC(1) CKFLVNGRWIDC(1) CFTWGGLRDKSC(1) 11 Phage display (common panning) 3 PMID:15577826 Anti-phl p 5a monoclonal antibody IgE Pollen allergen Phl p 5a Not determined. Not determined. CL10 phage display library (CX10C) Bound phages were eluted with glycine buffer. 308 CERAGAMERANC(22) CRSVSKEEPGMC(1) CKLGKFGAARVC(1) CVQDLMKSSGVC(1) 4 Phage display (competitive panning) 3 PMID:15577826 Anti-phl p 5a monoclonal antibody IgE Pollen allergen Phl p 5a Not determined. Not determined. CL10 phage display library (CX10C) Bound phages were eluted competitively by using recombinant Phl p 5a in Hepes/NaCl. 309 YSGSWWPPTYNNEVPL HTWWYNPPSYMGLEAS GTWTWWPPTYAGMDHL TLWGLFPPVYEDSFGL PWTSWWPPVYEGSTTN 6 Phage display (common panning) 3 PMID:15135114 Long neurotoxin 1 Not determined. Not determined. Not determined. X6PPX(Y/F)X6 phage display library 310 CSISTHSWC[3.32] CYGNWFSNC[2.65] 2 Phage display (common panning) 3 PMID:14736416 Anti-MBP monoclonal antibody MK16 Fab Myelin basic protein, MBP Not determined. Not determined. Ph.D.-C7C phage display library (CX7C) ELISA Absorbance was measured at 490 nm using an immunoreader (Emax). Data shown were reproduced from the graph. 311 CNYKTHSWC[3.76] CNYSVAHLC[3.76] CKWSVAHLC[2.12] CSIKTHSWC[NT] 4 Phage display (common panning) 6 PMID:14736416 Anti-MBP monoclonal antibody MK16 Fab Myelin basic protein, MBP Not determined. Not determined. Ph.D.-C7C phage display library (CX7C) ELISA Absorbance was measured at 490 nm using an immunoreader (Emax). Data shown were reproduced from the graph. NT denotes not tested. 312 SLNDWIDWSEPH SLNDWIDWAEPH LTVRSDTTKYSL SHSLMTSSSVWT EFIKSGRTLDRL SHTTPGKNNDPF SMHSFGGESWSQ LPG(M/L)KHTPSPTD SSNLPTAQALLK TLSHQNMDQRSN FPGVVVRPALGQ DTRPMTHLLEPV NYARDPLMSLPQ NNSYSPVLAYRV STAQKNVPTGLQ HLFKSNTLL(H/D)PP SLNDWIDWADPH SPTMPSSFALTE NTHHLLWKLARA SHHTQSFMQKTQ TNAPPPLLSSWA NWEKQIGWPSAS NSPWPSWSLPFR TGAFSNPYMFRN SPMKGTPTWSPN TSRAEASITRVF SVSVGMKPSPRP HNMWIPMLRASH SVSVWMKPSPRP SQAIQNLPGPG AYPFQVTRQPAG AEPFPSPKGSLK TQWNMYNPWTRQ SVSGGMKPSPRP SVSVGMKPSHRP GGIACTKWSPQG IANKGPPSHAAP TYAQLQPTPSLR ANPMKYLLSRPL GPTMRWTIPTPF GSFASTARMPGL SHKPPTNVIARL 42 Phage display (common panning) 5 PMID:15325109 Cerebellar granule neurons Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) 313 WAPPLFRSSLFY(4)[32] NFMESLPRLGMH(2)[19] FYSHSFHENWPS(2)[9.6] FHENWPSGGGSA(2)[3.4] 4 Phage display (common panning) 3 PMID:15279884 Self-assembled monolayer (SAM) of a Gb3 mimic Shiga toxin Not determined. Not determined. Ph.D.-12 phage display library (X12) Surface plasmon resonance (SPR) The dissociation constant, KD (μM), was calculated based on the SPR evaluation software. 314 LRRDYIRSP(2) QRRAATARS(1) ARRRAEPML(1) RKRSSADPL(1) RRHKSAPSS(1) KKYRNMAGP(1) FRAARHPQL(1) IRRLSGGPP(1) TPRLPGALE(1) WKKKLGASP(1) CTRGYLERRLC(1) 11 Phage display (common panning) 3 PMID:15163538 Anti-collagen alpha-1(II) chain monoclonal antibody CB268 Collagen alpha-1(II) chain Not determined. Not determined. pVIII-9aa and pVIII-9aa.Cys phage display library pool 315 RRLPFGSQM(4) RYAFGSQIA(2) HRLAFGQNT(1) HRLAFGQYT(1) HEHTFGRQW(1) RAAPFGNQW(1) TRAFGNEAT(1) RRLPFGSSL(1) TRSFGIQAT(1) CIAPKRHNSAC(1) CESAQRPFGCC(1) 11 Phage display (common panning) 3 PMID:15163538 Anti-collagen alpha-1(II) chain monoclonal antibody CII-C1 Collagen alpha-1(II) chain Not determined. Not determined. pVIII-9aa and pVIII-9aa.Cys phage display library pool 316 NRKDWIERTL(10) 1 Phage display (common panning) 3 PMID:15680153 Anti-nucleosome monoclonal antibody #32 Nucleosome Not determined. Not determined. L100 phage display library (X10) 317 EYRARGWGGWCR(2) 1 Phage display (common panning) 4 PMID:16399397 GST A1-1 fused protein Not determined. Not determined. Not determined. CX9C and CX15C phage display library pool 318 CGGGVWAVSGC(6) 1 Phage display (common panning) 3 PMID:16399397 GST P1-1 fused protein Not determined. Not determined. Not determined. CX9C and CX15C phage display library pool 319 CGVVRGPSRGC(5) 1 Phage display (common panning) 3 PMID:16399397 GST M2-2 fused protein Not determined. Not determined. Not determined. CX9C and CX15C phage display library pool 320 AQAFDYVPAWVV GFSYYRPPWIL LSPYRPSWVNLVGTS AVAYPVSAYVPAWVS AVVAVPSYIPTWIG YHACPPWVGIHRCEL VGLGDYGLDFAYVS GVMLCPQYFPSCRSL SVYALPDLSVPVWVR VHMIKPPWVGRLSSG ESFVPPWVVTVPPPR APGRVPALLIPPWAW GLFVPPFWGTTSGDL 13 Phage display (common panning) 3 PMID:14871530 Anti-MCPS monoclonal antibody 1E4 Meningococcal serogroup C capsular polysaccharide, MCPS Not determined. Not determined. f3-15mer phage display library (X15) 321 SYQWWWHSPQTL(10) WHQTYTSSLWES(6) HSSWYIQHFPPL(5) HSSPYTDYLWAV(3) 4 Phage display (common panning) 5 PMID:15522450 psi RNA Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) 322 HPPMNASHPHMH HTKHSHTSPPPL HVSHFHASRHER HLASGHSIHYRT HQAHNHTHPSSL HGSKANHPHIRA HTPSNHRHTHNW HAPHTHMRSWSA HVSHHATGHTHT HKLPSASRHHFH HTTPSHLHPHSR DPSTHQHPPHKH SPQHTHHARIKN HINHHHDTPSYR HPGVHSHPSPTP TVVQTYSMVTRA FSYRQSPPPPLY IMQNSISSPEML 18 Phage display (common panning) 3 PMID:16257264 Silicon dioxide, SiO2 Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12) 323 WHRTMWWWP(8)[0.75 ± 0.03] KPWWRTNTA(6)[0.99 ± 0.01] QNTDWLGNL(3)[1.06 ± 0.11] GMKAVRIQG(1)[1.44 ± 0.14] GKAMLDRAS(1)[1.60 ± 0.01] SHATVKAAV(1)[NT] PWWWMTRHW(1)[NT] HARSHYPWY(1)[NT] KWKWPDRPK(1)[NT] SLEHRAFRN(1)[NT] GKLNLGGYK(1)[NT] KMNKGVVNP(1)[NT] 12 Phage display (common panning) 6 PMID:10772861 Laminin-1 Not determined. Not determined. Not determined. J404 phage display library (X9) ELISA ELISA measurements of the binding to laminin-1 expressed as A405. Wild-type M13 phage was used as a control. Data shown were reproduced from the graph and expressed as the average of replicate wells ± SD. NT denotes not tested. For the first three round of panning, Bound phage were eluted using HCl-glycine. In rounds 4, 5 and 6, we applied a consecutive specific elution at neutral pH, which consisted of an elution with peptide 11 (CDPGYIGSR) in TBS. 324 DRTAMQVAA(2)[1.18 ± 0.01] VVSKISEAG(1)[NT] GGSVAFRAG(1)[NT] GPGAWWGSA(1)[NT] SKMHRNSWF(1)[NT] AKIPAGRDR(1)[NT] KMNKGVVNP(1)[NT] 7 Phage display (common panning) 6 PMID:10772861 Laminin-1 Not determined. Not determined. Not determined. J404 phage display library (X9) ELISA ELISA measurements of the binding to laminin-1 expressed as A405. Wild-type M13 phage was used as a control. Data shown were reproduced from the graph and expressed as the average of replicate wells ± SD. NT denotes not tested. For the first three round of panning, Bound phage were eluted using HCl-glycine. In rounds 4, 5 and 6, we applied a consecutive specific elution at neutral pH, which consisted of an elution with mixture of heparan sulfates from bovine kidney and bovine lens capsule in TBS. 325 STLSGFDLLGAI YMTSSSGPSRFS 2 Phage display (common panning) 3 PMID:15001356 Heat shock protein HSP 90-beta, HSP 90 Not determined. Not determined. Not determined. Ph.D.-12 phage display library (X12)